Stable purA vectors and uses therefor

ABSTRACT

This invention pertains to a complementation system for the selection and maintenance of expressed genes in bacterial hosts. The invention provides stable vectors which can be selected and maintained by complementation of chromosomal deletion mutations of purA (adenylosuccinate synthetase), obviating the use of antibiotic resistance genes. This system is useful in production organisms during fermentation and in live vaccine bacteria, such as attenuated Salmonella typhi. This system allows for selection of chromosomal integrants and for selection and stable plasmid maintenance in the vaccinated host without application of external selection pressure.

GOVERNMENT SUPPORT

Work described herein was supported in part by grant R43 AI 26995-01from the National Institutes of Health. The government has certainrights in the invention.

This application is a continuation of application Ser. No. 08/204,903filed Mar. 2, 1994, now abandoned, which is File Wrapper Continuationapplication of Ser. No. 07/695,706, filed May 3, 1991 (abandoned).

BACKGROUND OF THE INVENTION

Plasmids found in nature are distributed to dividing cells so thatdaughter cells receive at least one copy. Bacterial plasmid systemsutilize varying strategies to ensure correct partitioning of plasmids toprogeny cells. Maintaining plasmids at high copy number increases theprobability that daughter cells inherit at least one plasmid by randomdistribution so that the probability of progeny cells inheriting noplasmids is extremely low. Although random distribution systemstheoretically can function to partition plasmids to dividing cells,plasmids which are maintained at unit or low copy number per cell mustrely on active partition mechanisms. For example, plasmids which aremaintained at low copy or one copy per cell such as the E. coli F factor(incF1), plasmid prophage P1(incY) and R1 and NR1 (incF2), must utilizeactive partitioning systems to maintain plasmids in the dividing cellpopulation, since random distribution of plasmid would predict a lossrate of 25% per generation. Further, some higher copy number plasmidsrely on site specific recombinases to resolve multimer formation, whichfunctionally reduce the copy number of plasmids in cells and theirability to randomly partition by free diffusion.

Several active partitioning systems have been described for severalfamilies of bacterial plasmids. These systems share some commonfeatures. Plasmid replication functions can usually be assigned todistinct regions of plasmids. Plasmid replication regions (rep) of, forexample P1 or F, can be independently maintained in cells. However,miniF or miniP1 plasmids lacking partition regions are unstable and arelost from the population at frequencies predicted from randomdistribution.

The development of plasmid vectors for the bacterial expression ofheterologous genes for commercial purposes has been extensivelydocumented. Numerous cloning vehicles based on various plasmid repliconshave been described and used for production of proteins in E. coli andother bacteria. In the development of cloning vehicles suitable forexpression of foreign proteins, the usual strategy has been to designplasmids of low molecular weight with high or regulated copy number.These strategies have sometimes led to the elimination of partitionfunctions which would otherwise lead to stable plasmid inheritance. Highcopy number cloning vectors for the construction of production organismsoften show segregational instability.

The most common strategy for obtaining stable plasmid replication andinheritance in the host population in fermentation has been theinclusion of drug-resistance determinants on the cloning vehicle.Although addition of drugs to growth medium allows selection for cellscontaining plasmid, addition of antibiotics is unacceptable in manyinstances because of cost and possible contamination of the end product.

Several alternate strategies have been developed to achieve stableplasmid maintenance during fermentation. For example, the parB locus ofR1 has been subcloned into a variety of plasmid common cloning vectors.Resulting plasmids containing the R1 parB region showed enhancedstability when cultured in the absence of selective pressure. Likewise,the sop region of F can stabilize unstable oriC plasmids and P1 par canstabilize a mini-F plasmid that lacks its own partition functions. Thestability of cloning vectors containing tryptophan operon genes wasincreased by addition of the par locus of pSC101 and the unstablemulticopy vector derived from p15a (pACYC184) was stabilized by thepSC101 par locus. Other partition regions, such as a partition regionfrom a Salmonella typhimurium virulence plasmid, have also been usedsuccessfully to stabilize cloning vehicles.

Although cloning vehicles can essentially be stabilized by the additionof partition regions from stable plasmids, drug resistance determinantsare still commonly used during fermentation. Drug-resistance markers areconvenient for introduction of plasmids into host bacterial cells.Alternatively, plasmids can be introduced into recipient bacterial cellsby complementation of host chromosomal mutations by plasmid-borne genes.Complementation systems rely on the construction of particular hostchromosomal mutations, but can be used reliably to circumvent theinclusion of antibiotics to the culture medium. For example,complementation of nutritional defects can lead to plasmidstabilization. Complementation of a chromosomal mutation for asparticsemialdehyde dehydrogenase (asd) in Salmonella typhimurium or D-alanineracemase mutation (dal) in Bacillus subtilis, which each lead to faultycell wall biosynthesis and cell lysis, yields stable plasmid inheritancein the absence of selection in all viable cells of the culture. Both theasd and dal mutations can be phenotypically repaired by supplementationwith nutritional additives. On the other hand, complementation of anessential gene of the host, which defect cannot be overcome bynutritional supplementation can also stabilize plasmids. For example, anE. coli gene, ssb, is required for DNA replication and cell viabilityand prevents the accumulation of plasmidless cells during fermentationin a bioreactor when incorporated into a plasmid and can be used tocomplement a chromosomal ssb defect. Analogously, a plasmid borne copyof valyl tRNA synthetase stabilizes plasmids in E. coli containing achromosomal temperature-sensitive valyl tRNA synthetase. Plasmids canalso be stabilized by inclusion of a bacteriophage repressor gene, theloss of which leads to induction of host prophage and cell death.

SUMMARY OF THE INVENTION

A stable plasmid or bacteriophage vector system for selection andmaintenance has been developed for bacteria that can produceheterologous gene products during fermentation, or for use insegregational stabilization of antigen production in live attenuatedbacterial vaccines. This system relies on the complementation of achromosomal deletion mutation by expression of a functional gene foradenylosuccinate synthetase (purA gene product).

Three methods can be used to provide functional purA gene product(adenylosuccinate synthetase) for selection and maintenance. First, alow copy-number plasmid can be used as the vector from which expressionof the purA gene is sufficient to complement the chromosomal purA defectwithout overburdening the cell with an overabundance of the purA proteinproduct. A second method is to provide the purA gene on a highcopy-number plasmid from which it is inefficiently expressed. This canbe achieved by any of a variety of methods well known in the art fordown regulating gene expression, including site directed mutagenesis ofthe promoter or ribosome binding sequences to reduce the efficiency oftranscription and hence expression of the purA gene. A third method isto provide a functional purA gene on an integrating vector, such as aplasmid or bacteriophage unable to replicate within the recipient purAhost, and thus selecting for integration of the purA vector.

This system obviates the need to select bacterial transformants byantibiotic resistance and, for application to live bacterial vaccinevectors, prevents the release of drug-resistance genes into theenvironment and distribution to other gut flora by known geneticmechanisms. This invention is particularly useful in selection andmaintenance of plasmids or integrating vectors in live attenuatedbacterial vaccine strains, both in the growth and vaccine production andin antigen delivery phases in the vaccinated host.

BRIEF DESCRIPTION OF THE FIGURES

FIG. 1 shows the construction of plasmid, pPX3001, containing the E.coli purA gene under the control of the lacZ promoter.

FIG. 2 shows the construction of plasmid pPX3003 containing the E. colipurA gene and the gene encoding the binding sub-unit of the heat-labileenterotoxin (LT-B) of E. coli, under the control of the lacZ promoter.

FIG. 3 is a graph of the percent of S. dublin SL5653 cells carrying thepurA plasmids under selective (without added adenine) and non-selectiveconditions (with adenine added).

FIG. 4A shows an SDS polyacrylamide gel of total cellular protein fromcultures of SL5653/pPX3003 grown in media containing adenine (+ad) orwithout adenine (-ad). FIG. 4B shows a western blot of total cellproteins of SL5653/pPX3003 probed with goat anti-LT-B antiserum andvisualised with HRP labeled protein A.

FIG. 5 shows the construction of two low copy-number plasmid vectors.Plasmid, pPX3005, contains the entire LT-B coding sequence and aKanamycin-resistance determinant. Plasmid, pPX3006, contains the purAgene under the control of the lacZ promoter.

FIGS. 6A-6B show the construction of three purA plasmid vectorscontaining the coding sequence of LT-B (pPX3010), malarialcircumsporozoite (CS) protein gene (pPX3009), and the nucleotidesequence encoding an LT-B/CS fusion protein (pPX3007).

FIGS. 7A-7C shows the results of in vivo stabilization studies ofSalmonella typhimurium strains by purA complementation. S. typhimuriumrecovered from A: spleens, B: livers and C: peyers patches.

FIGS. 8A-8B shows the results of in vivo stabilization studies of S.typhi strains by purA complementation. S. typhi recovered from A: liversand B: spleens.

DETAILED DESCRIPTION OF THE INVENTION

Stable plasmid vectors for the complementation of chromosomal deletionmutations in the purA locus are described. These vectors can be used asa means for selecting clones carrying non-selectable markers or otherpassenger genes during clone construction. The vectors of this inventioncan also be used for maintaining these clones during growth for cultureamplification, vaccine strain production, and gene product isolation.

Stable purA vectors of the invention provide a functional purA genewhich is capable of expressing adenylosuccinate synthetase, repairingany defect in purine biosynthesis and allowing growth. In contrast, instrains with a defective purA gene, purine requirements can only besatisfied by nutritional supplementation with extracellular adenine oradenosine. Thus, growth of cells carrying the purA vector, inadenine-deficient medium ensures the continued selection and maintenanceof the plasmid vector. Deletions of the host purA gene are preferred asthese mutations do not revert. Extensive deletions are more preferablebecause these eliminate extensive homology between plasmid purA andchromosome, which could lead to chromosomal integration of the plasmidand to marker rescue of the purA gene in a double crossover event withconcomitant loss of the expressed passenger gene. Use of a complementingpurA gene from a heterologous bacterial source reduces the frequency ofthese possible undesired homologous recombination events.

This system relies on the complementation of a chromosomal deletionmutation by expression of a functional gene for adenylosuccinatesynthetase (purA gene product). The purA locus is especially importantin the design of live attenuated Salmonella and related enteric vaccinevectors since the presence of purA mutations on the chromosome leads toattenuation of virulence. In vivo, the presence of purA on a plasmid orbacteriophage vector which also codes for the expression of at least onepolypeptide immunogen, prevents the appearance of organisms lackingimmunogen expression within the vaccinated host. When combined withother attenuating loci, such as ones determiningauxotrophic-requirements for aromatic compounds, purA leads to furtherattenuation of virulence. Chromosomal deletion of these genes leads tothe impaired ability to replicate within the host, because of lack ofavailability of free purines (such as adenine or adenosine) or vitaminprecursors (such as folic acid) which are dependent upon aromaticcompound biosynthesis. Thus, Salmonella typimurium harboring deletionmutations in both aroA and in purA are ineffective in inducing asignificant immune response directed against the bacterium, whereasbacteria harboring solely defects in aromatic biosynthetic genes (suchas aroA) are effective in inducing immune responses. Although Salmonellaharboring aroA mutations are able to replicate to a limited extentintracellularly, those containing additional purA mutation arecompletely unable to replicate within the host. By providing the purAproduct of E. coli located on a plasmid to an aro purA host bacterium,the complemented vaccine has in vivo growth properties identical tothose of the Aro-mutant.

Several general methods for selection and stabilization of expressionare described herein using low copy-number plasmid vehicles, highcopy-number plasmid vehicles, and vectors allowing recovery of singlecopy chromosomal integration events. In the case of low copy-numbervectors, complementation of purA chromosomal defects can provideadditional stability to plasmids also containing functional partitionloci.

In the case of high copy-number vectors of this invention the purA geneis preferably mutated to reduce the efficiency of expression of the geneproduct and hence prevent growth inhibition by deleterious effects of anoverabundance of the adenylosuccinate synthetase (purA) enzyme.

Construction of purA Plasmid Vectors

Recombinant DNA technology was employed in the construction of the purAplasmids. Recombinant techniques involve insertion of specific DNAsequences into a DNA vehicle (vector) to form a recombinant DNA moleculewhich is capable of replication in a host cell. The inserted DNAsequence may be foreign to the recipient DNA vehicle, i.e., the insertedDNA sequence and the DNA vector are derived from organisms which do notexchange genetic information in nature, or the inserted DNA sequence maybe wholly or partially synthetically made. Several general methods havebeen developed which enable construction of recombinant DNA molecules.

Regardless of the method used for construction, the recombinant DNAmolecule must be compatible with the host cell, i.e., capable ofautonomous replication in the host cell or stably integrated into one ormore of the host cell's chromosomes or plasmids. The recombinant DNAmolecule should preferably also have a marker function which allows theselection of the desired recombinant DNA molecule(s). In addition, ifall of the proper replication, transcription, and translation signalsare correctly arranged on the recombinant vector, the foreign gene willbe properly expressed in, e.g., the transformed bacterial cells, in thecase of bacterial expression plasmids, or in permissive cell lines orhosts infected with a recombinant virus or carrying a recombinantplasmid having the appropriate origin of replication.

Different genetic signals and processing events control levels oftranscription and such as DNA transcription and messenger RNA (mRNA)translation. Transcription of DNA is dependent upon the presence of apromoter, which is a DNA sequence that directs the binding of RNApolymerase and thereby promotes mRNA synthesis. The DNA sequence ofeucaryotic promoters differs from those of procaryotic promoters.Furthermore, eucaryotic promoters and accompanying genetic signals maynot be recognized in or may not function in a procaryotic system, andfurthermore, procaryotic promoters are not recognized and do notfunction in eucaryotic cells.

Similarly, translation of mRNA in procaryotes depends upon the presenceof the proper procaryotic signals, which differ from those ofeucaryotes. Efficient translation of mRNA in procaryotes requires aribosome binding site called the Shine-Dalgarno (S/D) sequence (J. Shineand L. Dalgarno, Nature, 254:34-38 (1975)) on the mRNA. This sequence isa short nucleotide sequence of mRNA that is located before the startcodon, usually AUG, which encodes the amino-terminal (formyl-)methionine of the protein. The S/D sequences are complementary to the 3'end of the 16S rRNA (ribosomal RNA), and probably promote binding ofmRNA to ribosomes by duplexing with the rRNA to allow correctpositioning of the ribosome.

Successful expression of a cloned gene requires sufficient transcriptionof DNA, translation of the mRNA, and in some instances,post-translational modification of the protein. Expression vectors havebeen used to express genes under the control of an active promoter in asuitable host, and to increase protein production.

Various regulatory expression elements can be used, which are any of anumber of suitable transcription and translation elements that areactive in bacteria. For instance, promoters which may be used to directthe expression of the recombinant gene sequence include but are notlimited to the lactose operon promoter of E. coli, the hybrid trp-lacUV-5 promoter (tac) (H. DeBoer, et al., In Promoter Structure andFunction, (1982); R. L. Rodriguez and M. J. Chamberlain, eds., PraegerPublishing, New York), the leftward (PL) and the rightward (PR)promoters of bacteriophage lambda, bacteriophage T7 promoters, the trpoperon promoter, the 1pp promoter (E. coli lipoprotein gene promoter; K.Nakamura and I. Inouye, Cell, 18:1109-1117 (1979), etc. Other promotersproduced by recombinant DNA or synthetic techniques may also be used toprovide for transcription of the inserted sequences.

Specific initiation signals are also required for efficient translationof inserted protein coding sequences. These signals include the ATGinitiation codon and adjacent sequences. In cases where the native genesequences encoding its own initiation codon and adjacent sequences areinserted into the appropriate expression vectors, no additionaltranslational control signals may be needed. However, in cases where thenative translational signals are not present, exogenous translationalcontrol signals, including the ATG initiation codon, must be provided.The initiation codon must furthermore be in phase with the reading frameof the protein coding sequences to ensure translation of the entireinsert. These exogenous translational control signals and initiationcodons can be of a variety of origins, both natural and synthetic.

Methods for constructing the appropriate expression vectors may includein vitro recombinant DNA and synthetic techniques and in vivorecombinations (genetic recombination).

For reviews on maximizing gene expression, see Roberts and Lauer, Meth.Enzymol, 68:473 (1979); and W. Reznikoff and M. Gold, Maximizing GeneExpression, Plenum Press, New York (1986).

U.S. Pat. No. 4,237,224 to Cohen and Boyer describes production ofrecombinant plasmids using processes of cleavage with restrictionenzymes and joining with DNA ligase by known methods of ligation. Theserecombinant plasmids are then introduced by means of transformation andreplicated in unicellular cultures including procaryotic organisms andeucaryotic cells grown in tissue culture.

Another method for introducing recombinant DNA molecules intounicellular organisms is described by Collins and Hohn in U.S. Pat. No.4,304,863. This method utilizes a packaging/transduction system withbacteriophage vectors (cosmids).

The expression vector comprising the recombinant gene sequence shouldthen be transferred into a bacterial host cell where it can replicateand be expressed or undergo conditional replication. This can beaccomplished by any of numerous methods known in the art including butnot limited to transformation (e.g., of isolated plasmid DNA into theattenuated bacterial host), phage transduction (Schmeiger, Mol. Gen.Genetics, 119:75 (1972)), conjugation between bacterial host species,electroporation, etc.

Expression in Attenuated Invasive Bacteria

In a preferred embodiment of the present invention, the expressionvector comprising the purA gene is transferred into an attenuatedinvasive bacterium, where it is expressed, thus producing a bacterialstrain suitable for use as a live vaccine.

Any of various attenuated invasive bacteria can be used as a vehicle toexpress the recombinant gene(s) so that the heterologous antigen iseffectively presented to the host immune system, in the vaccineformulations of the present invention. The bacteria retain theirinvasive properties, but lose in large part their virulent properties,thus allowing them to multiply in the host to a limited extent, but notenough to cause significant disease or disorder. Examples of invasivebacteria which, in attenuated forms, may be used in the vaccineformulations of the invention include but are not limited to Salmonellaspp., invasive E. coli (EIEC), and Shigella spp. In a preferredembodiment, invasive bacteria which reside in lymphoid tissues such asthe spleen (e.g., Salmonella spp.) are used. Such bacteria can invadegut epithelial tissue and/or Peyer's patches, disseminate throughout thereticuloendothelial system, and gain access to mesenteric lymphoidtissue, liver and spleen, where they multiply or at least survive for atime, and induce humoral and cell-mediated immunity.

Attenuated invasive bacteria may be obtained by numerous methodsincluding but not limited to chemical mutagenesis, genetic insertion,deletion (J. Miller, Experiments in Molecular Genetics, Cold SpringHarbor Laboratory, Cold Spring Harbor, N.Y.) or recombinant DNAmethodology (T. Maniatis, et al., Molecular Cloning, A LaboratoryManual, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.),laboratory selection of natural mutations, etc. Methods for obtainingattenuated Salmonella strains which are non-reverting non-virulentauxotrophic mutants suitable for use as live vaccines are described inU.S. Pat. Nos. 4,550,081 (issued Oct. 29, 1985), 4,735,801 (issued onApr. 5, 1988) and 4,837,151 (issued Jun. 6, 1989), the teachings ofwhich are incorporated by reference herein in their entirety. A reliablemethod to achieve attenuation of Salmonella has also been described (S.K. Hoiseth, and B. A. D. Stocker, Nature, 291:238 (1981); B. A. D.Stocker et al., Develop. Biol. Standard, 53:47 (1982)) and can be usedin a particular embodiment of the invention.

Attenuated Salmonella which can be used in the live vaccine formulationsof the invention include but are not limited to those species listed inTable 1 below.

                  TABLE 1    ______________________________________    SALMONELLA SPECIES WHICH, IN ATTENUATED    FORMS, CAN BE USED IN THE VACCINE    FORMULATIONS OF THE PRESENT INVENTION*    ______________________________________              S. typhi              S. typhimurium              S. paratyphi A              S. paratyphi B              S. enteritidis              (e.g., Serotype dublin)    ______________________________________     *For a complete description of Salmonella serotypes, see Edward and Ewing     1986, Classification of the Enterobacteriaceae, 4th ed. Elsevier, N.Y.

In specific embodiments, Salmonella bacteria that have been attenutatedby chromosomal deletion of gene(s) for aromatic compound biosyntheorsis(aro), or mutation in the galE gene, or that are Cya-, CrpF- or lack theVir Plasmid, etc., can be used. Aro mutants which can be used includebut are not limited to S. typhi strains 543Ty and 541Ty, for use invaccines for humans, and S. typhimurium SL3261 and SL1479, and S.enteriditis serotype dublin SL1438, (also termed S. dublin) for use inanimals. (See U.S. Pat. No. 4,550,081 for a description of S.typhimurium strains such as 543Ty and 541Ty are avirulent in humans byvirtue of attenuation by deletion affecting genes aroA and/or purA (M.M. Levine, et al., J. Clin. Invest., 79:888 (1987)). Mutants of S.dublin, such as SL1438, and of S. typhimurium, such as SL3261, can beused in the development of animal model systems, since these species arecapable of causing animal diseases equivalent to typhoid fever. galEmutants which can used include but are not limited to Salmonella typhistrains Ty21a (Germanier, Bacteria Vaccines, Academic Press, NY pp.137-165) Salmonella typhimurium G30D, etc.

Expression of Gene Products and Uses

The invention also pertains to methods for introducing, selecting andmaintaining single or multiple copies of homologous and/or heterologousgenes, either in low copy-number plasmids, high copy-number plasmids orintegrated in the host bacterial chromosome as single or multiplecopies.

Expressible genes can be derived from eucaryotic sources and can encodeantigenic determinants from pathogenic parasites, human immunoactivepeptides and proteins, hormones, growth factors, allergens, tumorassociated antigens and other proteins. Such genes can be derived fromviral sources and can encode antigenic proteins, structural componentsor enzymes involved with viral replication or attachment. Homologousgenes as well as heterologous genes can be derived from bacterial viral,parasite, fungal or mammalian sources and may include genes encodingvirulence factors of pathogenic organisms, including toxins, protectiveimmunogenic proteins or genes encoding proteins involved in theregulation or synthesis of antigenic polysaccharide material and, inaddition, can be enzymes foreign to the host bacterium.

Among the bacterial antigens of interest are those associated with thehuman bacterial pathogens including Haemophilus influenzae, Escherichiacoli, Neisseria meningiditis, Streptococcus pneumoniae, Streptococcuspyogenes, Branhamella catarrhalis, Vibrio cholerae, Corynebacteriumdiphtheriae, Chlamydia trachomatis, Neisseria gonorrhea, Bordetellapertussis, Pseudomonas aeruginosa, Staphylococcus aureus, Klebsiellapneumoniae and Clostridium tetani. Examples of specific bacterialantigens of interest include bacterial proteins of which particularlyuseful examples are outer membrane proteins (e.g., from Haemophilusinfluenzae, Branhamella catarrhalis or Neisseria meningiditis),bacterial toxins, (e.g., pertussis toxins, diphtheria toxin, tetanustoxin and Pseudomonas exotoxin A) and bacterial surface proteins (e.g.,flagellins, hemagluttinins and the M protein from Streptococcuspyogenes).

Viral antigens from pathogenic viruses include but are not limited tohuman immunodeficiency virus (types I and II), human T cell leukemiavirus (types I, II and III), respiratory syncytial virus, hepatitis A,hepatitis B, hepatitis C, non-A and non-B hepatitis viruses, herpessimplex virus (types I and II), cytomegalovirus, influenza virus,parainfluenza virus, poliovirus, rotavirus, coronavirus, rubella virus,measles virus, varicella virus, Epstein Barr virus, adenovirus,papilloma virus and yellow fever virus.

Several specific viral antigens of these pathogenic viruses include theF protein (especially antigens containing the F peptide 283-315,described in WO89/02935 entitled "Respiratory Syncytial Virus: Vaccinesand Diagnostic Assays" by Paradiso, P. et al.) and the N and G proteinsof respiratory syncytial virus (RSV), VP4 (previously known as VP3), VP6and VP7 polypeptides of rotavirus, envelope glycoproteins of humanimmunodeficiency virus and the surface and presurface antigens ofhepatitis B and herpes glycoproteins B and D.

Fungal antigen that can be used are those derived from fungi includingbut not limited to Candida spp. (especially albicans), Cryptococcus spp.(especially neoformans), Blastomyces spp. (e.g., dermatitidis),Histoplasma spp. (especially capsulatum), Coccidioides spp. (especiallyimmitis), Paracoccidioides spp. (especially brasiliensis) andAspergillus spp. Examples of parasite antigens include but are notlimited to Plasmodium spp., Eimeria spp., Schistosoma spp., Trypanosomaspp., Babesia spp., Leishmania spp., Cryptosporidia spp., Toxoplasmaspp. and Pneumocystis spp.

Also of interest are various antigens associated with auto-immunediseases, such as rheumatoid arthritis and lupus erythematosus, tumorantigens, cancer antigens and single and multiple copies of genesencoding hormones, bioactive peptides, cytokines, lymphokines and growthfactors, as well as enzymes and structural proteins of procaryotic oreucaryotic origin, especially for use in vaccines or therapeutics.

To provide novel vaccine formulations, genes encoding protectiveantigens can be introduced into attenuated bacteria, which act asdelivery vehicles for stimulation of immune responses against thepathogen from which the expressed gene was derived. See Dougan and Tite,Seminars in Virology 1:29 (1990). Genes encoding antigens derived frompathogenic bacterial, viral or parasitic sources can be introduced intoattenuated Salmonella typhi for use as live vaccines in humans, toprotect against, for example, typhoid fever, diarrheal diseases andsexually transmitted diseases including AIDS. Alternatively, such genescan be introduced into other Salmonella capable of infecting animalspecies, e.g., S. dublin for use as live attenuated cattle vaccines(e.g., against shipping fever or bovine rotavirus), S. choleraesuis foruse as live attenuated vaccines for swine and S. gallinarum or S.pullorum for use as live attenuated vaccines for poultry. In aparticular embodiment, antigens derived from Eimeria parasites can beintroduced into attenuated S. gallinarum to produce an oral vaccine forcoccidial disease.

Alternatively, genes encoding antigens can be introduced into otherbacteria to be used as live vaccine delivery vehicles. Examples of suchcan include enteroinvasive Escherichia coli, Yersinia enterocolitica,Shigella flexneri, Shigella dysenteriae, Campylobacter jejuni and Vibriocholerae.

In addition, such genes can be introduced into bacterial hosts toprovide for efficient production of antigenic material for vaccineproduction. Expression of native or mutated genes derived from bacterialpathogens can result in enhanced and efficient antigen production. Forexample, genes encoding mutated toxins, genes encoding virulence factorsor other native proteins or mutated protective immunogens can beintroduced into homologous or heterologous bacterial strains. In manycases, virulence factors or protective antigens can be producedefficiently only in a particular host bacterium. In addition, geneswhich encode products involved in complex biosynthetic pathways leadingto bacterial surface polysaccharide or capsule production cannot bereadily cloned and expressed in other bacteria for the purpose ofproducing antigenic material for vaccine uses. Examples of such usesinclude introduction of genes encoding mutant cross-reacting toxins ofBordetella pertussis into toxin-deficient organisms for the productionof a pertussis vaccine.

Bacteria harboring the stable purA plasmids of this invention can beused as live vaccines for eliciting an immune response to an immunogenin a warm-blooded animal. The method comprises administering the livevaccine to the animal such that the bacterium contained in the vaccinecomposition can express the immunogen in an immunologically effectivedose capable of eliciting an immune response. The vaccines are usefulfor prevention of microbial infections. The vaccines may be administeredin a pharmaceutically acceptable vehicle, such as physiological saline,or ethanol polyols (such as glycerol or propylene glycol).

The vaccines can be administered to a human or animal in a variety ofways. These include intradermal, transdermal, intramuscular,intraperitoneal, intravenous, subcutaneous, oral and intranasal routesof administration. The amount of live attenuated bacteria employed insuch a vaccine will vary depending upon the identity of the antigenexpressed. Adjustment and manipulation of established dosage ranges iswell within the ability of those skilled in the art. The live vaccinesof the present invention are intended for use in the treatment of bothimmature and adult warm-blooded animals, and in particular humans.

Typically, vaccination regimens call for the administration of antigenover a period of weeks or months in order to stimulate a "protective"immune response. A protective immune response, is an immune responsesufficient to protect the immunized organism from productive infectionby a particular pathogen or pathogens to which the vaccine is directed.

The invention will be further illustrated by the followingexemplification which should not be construed as limiting the scope ofthe invention:

Exemplification

MATERIALS AND METHODS

Bacterial Strains and Plasmids

The bacterial strains and plasmids are described in Table 2 below.

                  TABLE 2    ______________________________________    Strains used in development of stable expression plasmids    for Salmonella vaccine strains    species/strain    designation               genotype    ______________________________________    Escherichia coli    JM103:     supE thi Δ(lac-proAB)hsdR4/F'                traDproAB.sup.+ laciq lacZm15    TX595      purA::mudlac T.sup.r (amp.sup.r)    TX595, λPB100               purA::mudlac T.sup.r (amp.sup.r) λPB100 (cm.sup.r)    Salmonella species    S. typhimurium    SL5495     zbj-908::Tn10 purAΔ155    SL3261     hisG46 aroADEL407    SL3261 pur hisGA6 aroADEL407 CRR zbj-               908::Tn10!Tc.sup.S purAΔ155    S. dublin  SVA47 aroAΔ148 CRR zbj-908::               Tn10!Tc.sup.S purAΔ155    SL5653    S. typhi    CDC10-80   wild type    679Ty      aroADEL148    BB1333     aroADEL148 aroDΔ9    BB1354     aroADEL148 aroDΔ9 CRR zbj-908::               Tn10!Tc.sup.S purAΔ155    ______________________________________

Media and Growth of Bacteria

Bacteria were grown in M9 medium supplemented with 0.5% casamino acids,0.2% glucose, 0.02% MgSO₄.7H₂ O, 5 μg/ml thiamine, 1 mM sodium citrate,5 μg/ml nicotinic acid, 30 μg/ml each of phenylalanine, tyrosine andtryptophan, 10 μg/ml 2,3-dihydroxybenzoic acid, 10 μg/mlpara-aminobenzoic acid and 1 μg/ml adenine. Plates contained 15 g agarper liter. Ampicillin was added at 100 μg/ml.

Genetic Transformation and Transduction

Plasmids were introduced directly into Salmonella by electroporationwith a BTX Transfector 100 with the 0.5 mm electrode and a fieldstrength of 15 kV/cm.

Plasmid constructions resulting from the ligation of syntheticoligonucleotides into plasmids were inserted into common laboratorystrains of Escherichia coli by transformation (for details, see Maniatiset al., Molecular Cloning, A Laboratory Manual, Cold Spring HarborLaboratory, Cold Spring Harbor, N.Y. (1982)). Plasmid constructions wereisolated and characterized first in E. coli, before transferring toSalmonella spp., because of the high transformation frequencies of E.coli K-12 relative to those of S. typhimurium. Plasmids were transferredinto S. typhimurium LT-2 LB5010, a strain which is restriction-negative(but modification-proficient) for the three restriction systems ofSalmonella typhimurium, and also contains a mutation in galE resultingin higher transformation frequencies (for a description of restrictionsystems of Salmonella typhimurium, see Bullas et al., J. Bacteriol.,141:275 (1980)).

Plasmids were then inserted into attenuated Salmonella by transductiontechniques. LB5010 containing the desired plasmid was grown in Luriabroth (LB) to a density of 3×10⁸ cells/ml, at which point D-galactose(to a final concentration of 1%) was added to the growth medium toinduce synthesis of "smooth" lipopolysaccharide (LPS). Following 1.5hours of growth in the presence of D-galactose, bacteriophage P22 HT105/1 int was added to the culture to a multiplicity of infection ofone. Following absorption of the phage, cells were immobilized in LBcontaining 0.7% agar. Phage were harvested and used to transduceplasmids into attenuated P22-sensitive Salmonella.

Electrotransfer Methods for Antigen Detection

Heterologous recombinant protein synthesis was detected in E. coli andSalmonella vaccine strain host cells by transblotting protein samplesseparated by polyacrylamide get electrophoresis onto nitrocellulosemembranes, blocking with 1.5% Tween-20 in PBS, followed by antibodybinding in 0.1% Tween-20. Bound antibody was detected with horseradishperoxidase labeled Protein A (Kirkegaard and Perry, Gaithersburg, Md).For detection of LT-B antigen, the primary antibody was goat α-LT-Bpolyclonal reagent, partially purified by eluting bound material from aSepharose 4B protein A affinity column.

Restriction Enzyme Analysis

Horizontal gel electrophoresis of DNA was performed using standardmethods (Maniatis, et al. "Molecular Cloning", Cold Spring Harbor,N.Y.). Restriction enzymes were purchased from Boehringer Mannhiem(Indianapolis, Ind.) and New England Biolabs Inc. (Beverly, Mass.).

In Vitro Stability Tests

Stability tests for plasmid-containing strains were carried out usingdilutions of 1:1,000 from overnight cultures in M9 medium supplementedas described above. Dilutions were plated in duplicate on selective andnon-selective media to determine plasmid retention. Additionally,colonies from non-selective plates were replicated using an FMCRepliPlate (Rockland, Me.) onto selective plates to verify plasmidretention.

Immunization of Mice

Inocula were grown in M9 medium supplemented as described above to adensity of 3×10⁸ organisms/ml as determined by a Klett-SommersonColorimeter. Cells were pelleted at 5000 rpm for 15 min at 4° C. andresuspended in 1.5% (w/v) sodium bicarbonate to 2×10¹⁰ organisms/ml(Klett 100) for intragastric (i.g.) inoculation and in phosphatebuffered saline pH 7.2 to 1×10⁷ organisms/ml for intravenous (i.v.) andintraperitoneal (i.p.) inoculation. Six week old BALB/c female mice wereused routinely (Jackson Laboratories). Food and water were withheld for4 hours prior to i.g. inoculation and returned 30 min post inoculation.1×10¹⁰ organisms/ml (0.5 ml inoculum) was administered i.g. using aPerfektum intubation needle (18G×2"). 1×10⁶ organisms/ml (0.1 ml) wasused for i.v. and i.p. inoculations.

Specimen Collection

Mice were sacrificed at various time points post inoculation. The liver,spleen and 3 Peyers patches were removed from each animal, placed inindividual sterile bags and homogenized for 30 sec with a StomacherModel 80 blender (A. J. Seward, London) using 5 ml of PBS (pH 7.2) foreach liver sample and 2 ml for each spleen and Peyers patches sample.

Bacterial Colonization and Plasmid Stability

Organ homogenates were plated on selective and non-selective M9 mediumsupplemented as described above to determine plasmid retention. Coloniesgrown on non-selective plates were replicated onto SS agar (Difco,Detroit, Mich.) and onto selective plates to verify the percent ofplasmid-containing colonies.

RESULTS

Complementation of purA auxotrophy in E. coli and Salmonella

The product of the purA gene, adenylosuccinate synthetase (EC 6.3.4.4)catalyzes the synthesis of adenylosuccinate from inosine monophosphate(IMP). This enzyme catalyzes the first committed step in the synthesisof adenine monophosphate (AMP) and is also involved in salvage pathwaysand the interconversion of nucleotides. Mutants of E. coli and otherclosely related enteric bacteria deficient in the structural gene foradenylosuccinate synthetase (purA) depend on exogenous adenine oradenosine, supplied nutritionally, for growth.

The gene for E. coli purA is contained within a 3.2 kilobase pair KpnIrestriction enzyme fragment in plasmid pJS76 (Wolfe, S. A. and J. MSmith, "Nucleotide sequence and analysis of the purA gene encodingadenylosuccinate synthetase of Escherichia coli K12", J. Biol. Chem.263:19147-19153 (1988)). For construction of plasmids which complementeither E. coli or Salmonella purA auxotrophies, plasmid pJS76 (obtainedfrom John M. Smith, Seattle Biomedical Research Institute), was used asa source of the E. coli purA gene product. Initially, the purA gene wasinserted into pUC19 by ligating a blunt-end 1.75 kilobase pair AccIfragment with the DraI-SmaI fragment of pUC19, as diagrammed in FIG. 1.Plasmid pPX3001 was recovered in E. coli TX595 by selection foradenine-independent colonies. This initial construct, pPX3001,essentially retained the origin of replication of the starting pUCvector and replaced β-lactamase gene with purA, while at the same timeretaining several useful cloning sites for further modification of theplasmid. This plasmid effectively complemented the purA gene defect inE. coli TX595 and resulted in a high copy-number plasmid phenotypecharacteristic of pUC plasmids.

Plasmid pPX3001 was further modified to contain an additional expressedgene product. The gene for the atoxic subunit of enterotoxigenic E. colilabile toxin (LT-B) on a 600 base pair blunt-end EcoRI-HindIII wascloned into pPX3001, using a blunt-end BamHI site, as shown in FIG. 2.This plasmid construct, pPX3003, was recovered by transforming E. coliTX595 and selecting adenine-independent clones which expressed proteinrecognized on colony blots by polyclonal anti-LT-B antibodies.

To examine stability of the purA vector, plasmid pPX3001, and thederivative LT-B expression plasmid pPX3003, were transformed into S.dublin SL5653 or into S. typhimurium BB1231, derivatives of Salmonellavaccine strains harboring deletion mutations in the purA gene.Salmonella transformants were examined for presence of the anticipatedplasmids by DNA analysis, and in the case of pPX3003, for expression ofLT-B. Suitable isolates of each strain were examined for retention ofplasmid following passage in vitro under selective and non-selectiveconditions. As demonstrated in FIG. 3, plasmid containing colonies wereinitially grown under selective conditions, e.g., in defined mediumlacking adenine, in overnight cultures. Samples in overnight cultureswere washed and diluted into fresh medium either with or without adeninesupplementation. After 10 generations of growth, cultures weretransferred to similar fresh medium. At each 10 generation increment,samples were withdrawn from the cultures, diluted and plated onto eitherselective or non-selective agar medium. The proportion of colonies ableto grow on unsupplemented media represents the portion of the culturepopulation containing a purA-complementing plasmid. In unsupplementedmedium, 100% of the colonies contain purA-complementing plasmids,whereas only a small percentage of resultant colonies from passage underadenine supplementation (non-selective conditions) contain plasmidsafter 40generations of growth. Further, in cultures of SL5653 containingthe LT-B expression plasmid pPX3003, LT-B expression and antigenicity isretained in the culture grown under selective conditions, but is lostunder non-selective conditions. After 40 generations, each of thecolonies from pPX3003/SL5653 grown under selective conditions arising onselective agar expresses LT-B, indicating no segregation of purA andLT-B expression. (See Table 3 and FIG. 4).

                                      TABLE 3    __________________________________________________________________________    Maintenance of medium and high-copy number expression plasmids    during culturing of Salmonella under selective and non-selective culture    conditions                              % plasmid containing colonies    Plasmid          derived              marker/                     host                         Selection                              generations of growth.sup.1    designation          from              expressed gene                     strain                         conditions                              10 20 30 40 80    __________________________________________________________________________    pUC8      Amp    SL3261                         +amp 100                                 100                                    100                                       100                                          100                         -amp  50                                  63                                     50                                        43                                          n.d.    pPX100          pUC8              Amp/LT-B                     SL3261                         +amp 100                                 100                                    100                                       100                                          100                         -amp  58                                 n.d.                                     71                                        41                                          n.d.    pPX1601          pBR322              Amp/CS-LT-B                     SL3261                         +amp 100                                 100                                    100                                       100                                          100                         -amp 100                                 100                                     85                                        54                                           33    pPX3001          pUC8              purA   SL5653                         -ade 100                                 100                                    100                                       100                                          100                         +ade  92                                  46                                     11                                        4 n.d.    pPX3003          pUC8              purA/LT-B                     SL5653                         -ade 100                                 100                                    100                                       100                                          100                         +ade  48                                  10                                     6  1 n.d.    __________________________________________________________________________     .sup.1 plasmid content was assessed by enumerating colonies from culture     dilutions on medium with and without selection;     n.d. = not determined

These results indicate that the expressed purA gene carried on a highcopy-number pUC plasmid functions to stabilize plasmids in the absenceof exogenous adenine supplementation. Although purA complementationstabilized an LT-B expression plasmid in vitro, the particular plasmids,pPX3001 and pPX3003, are not likely to be optimally useful in a liveSalmonella vaccine, since a combination of the purA and/or LT-Bexpression per se in the configuration above impedes the growth rate ofthe host Salmonella. In defined salts medium (M9) containing casaminoacids, pPX3001/SL5653 and pPX3003/SL5653 had a doubling time of 1 hour,whereas SL5653 grown in the same medium supplemented with adenine had adoubling time of approximately 30 minutes. Although impairment of growthrate would result in further attenuation of the bacteria after oralfeeding, it is also likely that decreased ability to establish atransient infection in the host animal would result in decreasedimmunogenicity. Thus, although plasmids are stabilized bycomplementation of chromosomal purA deletion, overexpression of thecandidate antigen hyperattenuates the vaccine strain.

It is well known that the high copy-number pUC vector plasmids arestable in E. coli and Salmonella strains. The observed instability ofthe purA derivatives of the pUC plasmids is probably due to theexpression of high levels of the purA gene product (seen as a 40Kdaltonprotein on SDS PAGE). The vectors of the present invention overcome thisdeleterious overexpression of the purA gene by one of two methods:First, by use of low copy-number plasmids to reduce the purA gene copynumber and hence its expression; and second, by use of high copy-numberplasmids carrying a purA gene which is inefficiently expressed.

Low Copy-Number Expression Plasmids and Integrated Expressed Genes

The above-results suggest that gene expression tailored to be neutral tothe in vivo growth properties of a live Salmonella vaccine strain,combined with genetic stability, should yield a maximally immunogenicvaccine configuration. Appropriate levels of gene expression may berelated inherently to the properties of the expressed antigen as well asthe level to which it is expressed in the Salmonella vaccine strain.Several factors which may influence tolerance of the bacterial hoststrain to antigen expression include intracellular localization of theantigen, level of expression and stability of the antigen to proteolyticprocessing. Some of these factors may in turn be influenced bytranscriptional and translational signals such as promoter strength,efficiency of ribosome recruitment and gene copy number.

To create a situation in which LT-B expression was stabilized by purAcomplementation and tailored to be neutral to the growth of a Salmonellavaccine strain, the effect of gene copy number on LT-B expression andtolerance by the Salmonella host was examined. This was examined underseveral conditions, one in which a lac promoter controlled LT-B wasexpressed on a low copy-number plasmid vector and one in which LT-B wasexpressed as a single chromosomal copy.

To construct a low copy-number LT-B expression plasmid, plasmid pGD103(R. A. Deich et al.,(1988) J. Bacteriol. 170; 489-498), was digestedwith EcoRI and HincII and an EcoRI RsaI DNA fragment containing theentire LT-B coding sequence was cloned into the vector to yield pPX3005,an LT-B expressing plasmid also containing a kanamycin-resistancedeterminant. (See FIG. 5). Plasmid pPX3005 was transformed byelectroporation into S. typhimurium SL3261. The growth of SL3261harboring pPX3005 was compared with SL3261 containing the parentalplasmid and with SL3261 proper. In M9 medium containing 0.5% casaminoacids, no difference in growth rate was seen between the three strains,each with doubling times of approximately 45 minutes. This resultsuggested that the expression level of LT-B in this configuration wasneutral to the growth properties of the host SL3261.

A chromosomal integrant of LT-B was obtained in the following manner: Aplasmid containing a 31 base inverted repeat derived from the extremeends of Tn10 and the expressed transposon gene of Tn10 under control ofthe tac promoter located outside the inverted repeat sequences was usedto create a transposon which expressed LT-B. An 800 base pair HaeIIrestriction enzyme fragment, carrying the lac promoter region and thestructural gene for LT-B was cloned into the transposon vector, alsocontaining a kanamycin-resistance determinant. In this configuration,the gene for LT-B and kanamycin resistance were flanked by the invertedrepeat sequences. To create a suicide vector for use in Salmonellastrains, the transposon carrying LT-B and kanamycin was crossed into aderivative of λgt11 so that a hybrid phage particle carrying the LT-Btransposon and the Tn10 transposase was constructed. A full explanationof this technique can be found in U.S. Ser. No. 07/590,364, filed Sep.28, 1990, the teachings of which are incorporated herein by reference,and is similar to modified transposons described by Herrero et al., J.Bacteriol: 172: 6537-67 (1990). The modified λ phage carrying the LT-Btransposon was used to infect Salmonella LB5010/F112, carrying anexpressed λ phage receptor. Since DNA of phage λ does not replicate inSalmonella, clones selected for kanamycin-resistance result fromtransposition of the modified transposon onto the chromosome. Severalindependent isolates were obtained; all expressed the LT-B antigen.Several of the S. typhimurium LB5010 isolates were retained and P22phage lysates propagated on them were used to transduce thechromosomally located expression cassette into the Salmonella vaccinestrain SL3261. Two independent SL3261 LT-B chromosomal integrants,resulting from transduction from two separate alleles, located indifferent loci in the Salmonella chromosome, were found to be stable invitro and in vivo.

Construction of a Low Copy-Number purA Vector

Plasmid pGD103 was modified to contain the E. coli purA gene and severalunique cloning sites. The 1.7 kilobase pair AccI fragment of pJS76 wasinserted into the XmnI XhoI sites of pGD103, to yield pPX3006. (See FIG.5). In this plasmid, the kanamycin-resistance determinant was entirelyreplaced with purA, creating a vector with unique BamHI, SmaI, PstI andSalI sites.

Low Copy-Number purA Vector Containing PL Promoter Expression Cassettes

Plasmid pPX3006 was used as a vector to construct several lowcopy-number plasmids which expressed gene products under control of thestrong λ PL promoter. It is expected that certain gene products whosetranscription is regulated by the P1 promoter will be produced in thehost bacterial cell at high levels compared with genes under control ofweaker promoters such as the lac promoter. Further, because Salmonellastrains are known not to be lysogenic for bacteriophage λ, expression ofplasmid borne PL promoted proteins will be constitutive. Combined withstabilization by complementation of purA, such configurations willpossibly overcome low levels of gene expression associated with lowcopy-number of the vector plasmid, pPX3006 and will enhanceimmunogenicity of live attenuated recombinant Salmonella strains.

Several versions of the Plasmodium berghei circumsporozoite protein (CS)gene were stabilized in pPX3006. The CS gene has been implicated as oneof the major immunogens of the malaria sporozoite coat and, as such, isa candidate for a subunit approach for a malaria vaccine. The structuresof several CS genes have been elucidated, revealing that all have asimilar overall structure. The single outstanding feature of each isthat they contain a central repeating peptide, comprising up to onethird of the protein. The repeat regions are immunodominant, since thebulk of anti-sporozoite antibodies are directed against these regions.Although antibodies to the repeat regions have been implicated inprotection against the sporozoite stage of malaria, antibodies alone areinsufficient to achieve protection against sporozoite infection. It islikely that protection against sporozoite stage of malaria parasitesinvolves not only a humoral response, but also a strong T-cell response.Most likely activation of cytotoxic T lymphocytes which recognizeportions of the CS protein and other proteins of the developingsporozoite on the surface of sporozoite-infected hepatocytes is requiredfor protection. Thus, vaccines designed to stimulate those responsesspecifically, or in conjunction with humoral responses, is necessary ineffective malaria vaccines. Stimulation of cellular immunity at thelevel of cytotoxic T-cells can be achieved by delivering antigen toantigen presenting cells in a manner such that they are likely to beprocessed by an internal pathway of processing. Presentation of antigensvia internal pathways may result preferentially in surface expression ofantigen in association with class-I restricted MHC, usually associatedwith stimulation of CD8± cytotoxic T-cells. Expression of the CS proteinof P. berghei and P. falciparum in attenuated Salmonella and subsequentoral immunization has resulted in induction of specific CD+ cytotoxicT-cells recognizing peptides of these CS proteins. Further, oralimmunization of mice with P. berghei CS protein constructs resulted insignificant protection against sporozoite challenge, usually onlyachieved by vaccination of animals with gamma-ray inactivatedsporozoites.

Although protection against sporozoite challenge has been documented byvaccination with CS protein-expressing Salmonella, protection wasincomplete, suggesting that adequate induction of immunity had notoccurred. Further, this suggests that factors relating to CS proteinexpression in the attenuated Salmonella vaccine strain might bemanipulated for enhanced immunogenicity. Such factors include, asmentioned above, gene regulatory signals, presumably affecting level ofprotein expression, stability of the expressed protein, and geneticstability of the expressed protein. If, during the course of thetransient infection by the attenuated Salmonella, a significantproportion of the immunizing bacteria lose plasmid due to segregation,effective immunization will not occur.

To evaluate the stabilization of CS protein constructs bycomplementation of purA, a full length CS protein construct was insertedinto the BamHI site of pPX3006. This construct contains the entirecoding sequence of the P. berghei (ANKA) CS protein gene expressed fromthe PL promoter and was designated pPX3009 (FIG. 6). A second constructcontaining a truncated CS protein (pPX1601) expressed from the P1promoter as a fusion protein with the first 30 amino acids of LT-B wasinserted into the BamHI site of pPX3006. This construct contains an LT-Bfusion protein with an expressed portion of the CS protein lacking 60amino acids of the amino terminus and 30 amino acids of the carboxyterminus. This construct was designated pPX3007 (FIG. 6). Bothconstructs were transformed into S. typhimurium BB1231 (ΔpurA), byselection for purine independence. When expression was compared to theircognate higher copy-number parental plasmids (derived from pBR322), nodifference in levels of expression in SL3261 was seen, suggesting thatgene expression was uncoupled from gene copy-number.

A third promoter controlled expression cassette was examined forstabilization by purA complementation. The coding sequence for LT-B (ona 590 base pair EcoRI-HindIII fragment, blunted by the action of Klenowenzyme) was inserted into the HpaI site of pPLλ (Pharmacia MolecularBiologicals, Piscataway, N.J.) to yield pPX1602. The coding sequence ofLT-B, now located on a 1.7 kilobase pair BamHI fragment, was insertedinto the BamHI site of pPX3006 to yield pPX3010 (FIG. 6). This plasmidwas transformed into BB1231. Expression of LT-B antigen was compared atdifferent points in the growth cycle of Salmonella and was comparedbetween gene integrated forms, high copy-number plasmid forms and lowcopy-number plasmid forms. Maximum gene expression was seen in overnightcultures of the bacteria. Expression level was related to genecopy-number when expression of LT-B was controlled by the lac promoter.Expression was greatest in cultures containing pPX100, followed bypPX3005; with least expression being seen in cultures of SL3261λ3.However, expression of LT-B from pPX3010 exceeded that observed incultures of pPX100, demonstrating that strong PL promoter had overcomegene copy-number effects for expression of LT-B antigen.

In Vitro Stability of Low Copy-Number and ChromosomalIntegrant_Expression Cassettes

S. typhimurium SL3261 strains carrying expression cassettes on pBR322,pUC or pSC101 derivatives were compared for stability upon culturing inthe absence of selection. As seen in Table 3, pUC vector plasmids orexpression plasmids based on pUC plasmids, were drastically unstableupon culturing in vitro without ampicillin selection. Moreover, aplasmid (pPX1601) derived from pBR322 expressing a truncated P. bergheiCS/LT-B fusion protein (described above) showed significant loss frompassaged cultures in the absence of ampicillin.

When any of these expression cassettes was cloned into either pGD103 orits purA derivative (pPX3006), 100% retention of expression plasmids wasobserved for up to 80 generations. This result indicates that plasmidsbased on pSC101 replicon are inherently stable in S. typhimurium.Further, that purA gene of E. coli is effective in replacingdrug-resistance determinants usually associated with cloning plasmids.(See Table 4).

                                      TABLE 4    __________________________________________________________________________    Maintenance of low-copy number expression plasmids containing parB    during culturing of Salmonella typhimurium under selective and    non-selective culture conditions                                 % plasmid containing colonies    Plasmid          derived               marker/                      host  Selection                                 generations of growth.sup.1    designation          from expressed gene                      strain                            conditions                                 10 20 30 40 80    __________________________________________________________________________    pGD103          pSC101               Kan    SL3261                            +kan 100                                    100                                       100                                          100                                             100                            -kan 100                                    100                                       100                                          100                                             100    pPX3005          pGD103               Kan/LT-B                      SL3261                            +kan 100                                    100                                       100                                          100                                             100                            -kan 100                                    100                                       100                                          100                                             100    pPX3006          pGD103               purA/LT-B                      SL3261pur                            -ade 100                                    100                                       100                                          100                                             100                            +ade 100                                    100                                       100                                          100                                             100    pPX3007          pPX3006               purA/LT-B CS                      SL3261pur                            -ade 100                                    100                                       100                                          100                                             100                            +ade 100                                    100                                       100                                          100                                             100    pPX3009          pPX3006               purA/CS                      SL3261pur                            -ade 100                                    100                                       100                                          100                                             100                            +ade 100                                    100                                       100                                          100                                             100    pPX3010          pPX3006               purA/LT-B                      SL3261pur                            -ade 100                                    100                                       100                                          100                                             100                            +ade 100                                    100                                       100                                          100                                             100    __________________________________________________________________________     .sup.1 plasmid content was assessed by enumerating colonies from culture     dilutions on medium with and without selection;     n.d. = not determined

Plasmid vectors containing the partitioning regions and functionsassociated with pSC101 are stable in E. coli and Salmonella under batchculture conditions. Although the par region of pSC101 is retained inpGD103 and the purA derivatives described here, partition functionsalone may not be sufficient to allow effective plasmid stabilizationduring fermentation of the recombinant vaccine strains during production(Nilsson and Skogman 1986. Biotechnology 4:901-903). Plasmidcomplementation of a purA deletion mutation on the chromosome combinedwith retention of partition functions allows for efficient stabilityduring batch growth, growth under nutrient-limiting conditions andduring fermentation.

In Vivo Stabilization of Salmonella typhimurium Vaccine Strains by purAComplementation

To examine the stabilization of pSC101 plasmids by purA complementationunder vaccination conditions, mice were immunized orally with SL3261,BB1231 (SL3261ΔpurA) and pPX3006/BB1231. Organ samples were obtained andexamined for presence of the immunizing organisms up to 30 daysfollowing oral ingestion of the bacteria. As can be seen in FIGS. 7A-7C,BB1231 could be cultured from samples of spleen, liver and Peyer'sPatches at very low levels only 2 days post inoculation, whereas, SL3261and complemented BB1231 could be recovered in tissue samples for severalweeks. The complemented vaccine strain yielded in vivo growthcharacteristics similar, if not identical within statistical variation,to SL3261. This indicates that purA complementation effectively restoresthe chromosomal purA deletion to pur+ behavior and is effectivelyneutral to invasion and bacterial replication properties of the vaccinestrain.

Plasmids based on pSC101 are also stabilized in vivo. As shown in Table5, in support of in vitro stability data, plasmids based on pSC101,whether additionally stabilized by purA complementation or not, arecompletely stable in organ samples obtained up to 29 days postinoculation. For those animals immunized with LT-B expression plasmids,all of the isolates characterized as containing plasmids also expressedthe antigen. In contrast, a minority of organisms recovered from animalsimmunized with either pUC vector or pPX100 contained plasmid, so that noplasmid-containing organisms could be cultured from organ samples 15days post inoculation. In addition, those animals receiving a geneintegrated form of LT-B also showed 100% retention of expression (ofkanamycin-resistance and LT-B).

                                      TABLE 5    __________________________________________________________________________    Persistence of plasmid-containing S. typhimurium aroA in Peyer's patches                Day 10     Day 15     Day 29    Immunizing            Animal     % with     % with     % with    bacteria, 10.sup.9 p.o.            #   total                   drugR                       plasmid                           total                              drugR                                  plasmid                                      total                                         drugA                                             plasm    __________________________________________________________________________    pUC8/S12261            #1  2  2   100 1  1   100 0  0   na    (vector control)            #2  0  0   na  0  0   na  6  0   0            #3  1  1   100 158                              3   2   0  0   na    pPX100/SL3261            #1  3  3   100 59 0   0   1  0   0    (pUC LT-B)            #2  36 0   0   44 0   0   1  0   0            #3  360                   0   0   0  0   na  1  0   0    pGD103/SL3261            #1  612                   612 100 0  0   na  8  8   100    (pSC101-derived            #2  370                   370 100 103                              103 100 0  0   100    vector) #3  456                   456 100 102                              102 100 8  8   100    pPX3005/SL3261            #1  600                   600 100 40 40  100 1  1   100    (pGD103 LT-B)            #2  218                   218 100 31 31  100 0  0   na            #3  436                   436 100 30 30  100 0  0   na    3261λ3            #1  28 28  100 18 18  100 1  1   100    (LT-B   #2  300                   300 100 43 43  100 1  1   100    integrant)            #3  480                   480 100 29 29  100 1  1   100    __________________________________________________________________________

Stabilization of Gene Expression in S. typhi Vaccine Strains

Although S. typhimurium and S. dublin attenuated strains may be used toassess immunogenicity in animal models or could be developed intorecombinant vaccines for veterinary use, they are not ideally useful inhuman application to either typhoid fever vaccination programs or asvectors for delivery of heterologous antigens to the human immunesystem. To demonstrate the utility of purA complementation in attenuatedS. typhi, pPX3006 and pPX3010 were transformed by electroporation intoan aroA S. typhi candidate BB1354 (679Ty ΔpurA). Presence of plasmid wasverified and expression of LT-B in pPX3010 transformants was confirmedby western blot analysis. The two strains were examined for growthproperties: doubling times for plasmid containing transformants weresimilar to untransformed parent. The two plasmid containing strains wereexamined for plasmid stability in vitro by passaging in the absence andpresence of adenine. Both plasmids were 100% stable for up to 80generations with and without selection.

S. typhi strains 679Ty, BB1354 and pPX3006/BB1354 were compared forability to persist within deep tissues following parenteral inoculation.S. typhi in its natural state is not a pathogen for mice and does notinfect mice orally. When pPX3006/BB1354 or 679Ty (10⁷ bacteria peranimal) were used to inoculate mice, organisms were recovered fromlivers and spleens for up to 10 days following inoculation. On the otherhand, BB1354 (10⁷ organisms per animal) was recoverable only at very lowlevels for several days, demonstrating limited ability for these strainsto grow in animal tissues. Further, complementation of the chromosomalpurA deletion with purA gene on plasmid pPX3006 also complements abilityof the deletion to persist in tissues. (See FIGS. 8A-8B).

The in vivo and in vitro results in S. typhimurium and S. typhi aroApurA strains clearly demonstrate the ability of plasmid-borne purA geneof E. coli to complement chromosomal defects in these strains. Moresignificantly, complementation of the purA defect on a low copy-stableplasmid vector is neutral to the in vivo growth behavior of the vaccinebacteria. This strongly suggests that recombinant bacteria utilizingpurA complementation should allow stable expression of heterologousantigens useful in oral inoculation.

PurA Gene as a Marker for Chromosomal Integration

To create more versatile means to manipulate the E. coli purA gene, the1.74 kilobase pair AccI purA-containing fragment was adapted withvarious linkers to contain symmetrical unique restriction sites. Onelinker contained a single restriction site for SalI; the SalI linkeredpurA gene was cloned into the SalI site of pUC18. This plasmid wassubsequently used as a source for the purA gene flanked by unique SalIsites.

A modified transposon was constructed to contain both the purA gene andLT-B (PL controlled) in the following manner. Phage λ112 was firstconstructed by subcloning the BamHI fragment containing the PL promoterand LT-B structural gene from pPX1602 into a transposition plasmid inwhich the inverted 31 repeats of Tn10 flanked a kanamycin-resistancedeterminant. The resulting plasmid, designated pPX1584, contained LT-Band kanamycin-resistance flanked by inverted repeats. The transposablecassette was crossed into a derivative of λgt11 by homologousrecombination between the ends of Tn10. The ability of the transposon toyield transposition events was assessed by transducing LB5010/F112.Expression of LT-B was verified in independent isolate. The SalIlinkered E. coli purA gene was used to replace the kanamycin-resistancedeterminant of λ112 by directly subcloning the piece into the XhoI siteof λ112 and selecting purA+ lysogens in E. coli TX595. The modifiedphage contains purA gene and LT-B and is used to transduce S.typhimurium LB5010 ΔpurA/F112 or S. typhi aroA ΔpurA/F112 to purineindependence. Such transductants invariably arise from the transpositionof purA and LT-B to random locations on the Salmonella chromosome.

Strain Deposits

The following strains were deposited with the (ATCC), Rockville, Md.,under the provisions of the Budapest Treaty:

    ______________________________________                        ATCC                        Accession                                 Deposit            Strain      No.      Date    ______________________________________    S. typhimurium:              BB1231 (aroApurA)                            55107    October 29, 1990    S. typhimurium:              pPX3005/BB1231                            68451    October 29, 1990    S. typhimurium:              pPX3006/BB1231                            68452    October 29, 1990    S. typhimurium;              pPX3010/BB1231                            68453    October 29, 1990    S. typhimurium:              pPX3009/BB1231                            68612    May 3, 1991    S. typhi: BB1354        --       May 3, 1991    ______________________________________

Equivalents

Those skilled in the art will recognize, or be able to ascertain, usingno more than routine experimentation, many equivalents to the specificembodiments of the invention described herein. Such equivalents areintended to be encompassed by the following claims:

We claim:
 1. A plasmid or phage vector which does not contain anantibiotic resistance determinant, which has been additionally modifiedby the insertion of DNA containing a purA gene encoding adenylosuccinatesynthetase.
 2. The vector of claim 1 which is a low copy-number plasmidvector.
 3. The vector of claim 1 which is a high copy-number plasmidthat contains a down regulated purA gene.
 4. The vector of claim 1,further comprising a nucleotide sequence encoding at least one antigenor fragment thereof.
 5. The vector of claim 4, wherein the antigen is aviral, bacterial, fungal or parasitic antigen of a warm-blooded animalor human pathogen.
 6. The vector of claim 5, wherein the bacterialantigen is derived from a pathogen selected from the group consisting ofHaemophilus influenzae, Escherichia coli, Neisseria meningiditis,Streptococcus pneumoniae, Streptococcus pyogenes, Branhamellacatarrhalis, Vibrio cholerae, Corynebacterium diphtheriae, Chlamydiatrachomatis, Neisseria gonorrhea, Bordetella pertussis, Pseudomonasaeruginosa, Staphylococcus aureus, Klebsiella pneumoniae and Clostridiumtetani.
 7. The vector of claim 5 wherein the viral antigen is derivedfrom a virus selected from the group consisting of humanimmunodeficiency virus (types I and II), human T lymphocyte virus (typesI, II and III), respiratory syncytial virus, hepatitis A, hepatitis B,hepatitis C, non-A and non-B hepatitis viruses, herpes simplex virus(types I and II), cytomegalovirus, influenza virus, parainfluenza virus,poliovirus, rotavirus, coronavirus, rubella virus, measles virus,varicella virus, Epstein Barr virus, adenovirus, papilloma virus andyellow fever virus.
 8. A stable plasmid or phage vector which does notcontain an antibiotic resistance locus, the vector containing a purAgene encoding adenylosuccinate synthetase and at least one other geneencoding an antigen or fragment thereof.
 9. The vector of claim 8 whichis a low copy-number plasmid vector.
 10. The vector of claim 8 which isa high copy-number plasmid that contains a down regulated purA gene. 11.The vector of claim 8, wherein the antigen is a viral, bacterial, fungalor parasitic antigen of a warm-blooded animal or human pathogen.
 12. Astable low copy-number plasmid vector selected from the group consistingof pPX3005 (ATCC 68451), pPX3006 (ATCC 68452), pPX3009 (ATCC68612),pPX3010 (ATCC 68453) and pPX3007.
 13. A purA⁻ bacterial host whichharbors the plasmid of claim
 1. 14. A purA⁻ bacterial host which harborsthe plasmid of claim
 8. 15. A purA⁻ attenuated bacterium which harbors astable plasmid or phage vector, which does not contain an antibioticresistance determinant, further containing a heterologous purA geneencoding adenylosuccinate synthetase and at least one other geneencoding a heterologous gene product.
 16. The bacterium of claim 15,wherein the plasmid is a low copy-number plasmid.
 17. The bacterium ofclaim 15, wherein the plasmid is a high copy-number plasmid thatcontains a down regulated purA gene.
 18. The bacterium of claim 15 whichhas a purA chromosomal gene mutation and optionally a chromosomalmutation in one or more genes functional in aromatic compoundbiosynthesis or galactose metabolism.
 19. The bacterium of claim 18 inwhich the optional mutation is an aroA, aroC, aroD, galE mutation orcombinations thereof.
 20. The bacterium of claim 15, wherein the geneproduct is of viral, bacterial, fungal or parasitic origin of awarm-blooded or human pathogen.
 21. The bacterium of claim 15 which isan enteroinvasive bacterium of the genus Salmonella, Shigella, Yersinia,Escherichia, Vibrio and Campylobacter.
 22. A composition comprising apurA⁻ bacterium harboring the plasmid of claim
 8. 23. The composition ofclaim 22, wherein the bacterium is an attenuated enteroinvasivebacterium.
 24. The composition of claim 23, wherein the enteroinvasivebacterium is of the genus Salmonella, Shigella, Yersinia, Escherichia,Vibrio, and Campylobacter.
 25. The composition of claim 24, wherein theenteroinvasive bacterium is Salmonella typhi, Salmonella typhimurium orSalmonella enteritidis.
 26. The composition of claim 23, in which thebacterium has a purA chromosomal gene mutation and optionally achromosomal mutation in one or more genes functional in aromaticcompound biosynthesis or galactose metabolism.
 27. The composition ofclaim 26 in which the optional mutation is an aroA, aroC, aroD, galEmutation or combinations thereof.
 28. The composition of claim 22,wherein the antigen is a viral, bacterial, fungal or parasitic antigenof a warm-blooded animal or human pathogen.
 29. The composition of claim28, wherein the antigen is an epitope of a malarial circumsporozoiteprotein which is expressed as part of a fusion protein comprising thecircumsporozoite epitope and B-subunit of heat-labile enterotoxin of E.coli or a portion thereof which combined with the circumsporozoiteepitope produces an immunoactive fusion protein.
 30. The composition ofclaim 29, wherein the malaria parasite is Plasmodium falciparum,Plasmodium vivax, Plasmodium ovale, Plasmodium malariae, Plasmodiumberghei, Plasmodium yoelii, Plasmodium knowlesi and Plasmodiumcynomolgi.
 31. A method for selecting and maintaining bacterialtransformants of interest using non-antibiotic selection means,comprising inserting a stable purA vector which does not contain anantibiotic resistance determinant into host bacteria which are deficientin the purA gene, selectively growing the bacteria in adenine-deficientmedium and selecting purA plasmid-containing bacterial colonies grownthereon.
 32. A plasmid or phage which does not contain an antibioticresistance determinant, bearing a purA gene whose acquisition by a hostcell can be selected by purine-independent growth.
 33. A plasmid orphage vector containing a functional partition locus and which does notcontain an antibiotic resistance determinant, which has beenadditionally modified by the insertion of DNA containing the purA geneencoding adenylosuccinate synthetase.
 34. The vector of claim 33,wherein the partition locus is parB.
 35. A stable plasmid or phagevector which does not contain an antibiotic resistance locus, the vectorcontaining a purA gene encoding adenylosuccinate synthetase, afunctional partition loci and at least one other gene encoding anantigen or fragment thereof.
 36. The vector of claim 35, wherein thepartition locus is parB.
 37. A purA⁻ attenuated bacterium which harborsa stable plasmid which does not contain an antibiotic resistancedeterminant containing a heterologous purA gene encodingadenylosuccinate synthetase, a functional partition locus and at leastone other gene encoding a heterologous gene product.
 38. The bacteriumof claim 37, wherein the partition locus is parB.
 39. A method forselecting and maintaining bacterial transformants of interest usingnon-antibiotic selection means, comprising inserting a stable purAvector which does not contain an antibiotic resistance determinant intohost bacteria containing a functional partition locus and which aredeficient in the purA gene, selectively growing the bacteria inadenine-deficient medium, and selecting purA plasmid-containingbacterial colonies grown thereon.
 40. The method of claim 39, whereinthe partition locus is parB.
 41. A stable plasmid or phage vector whichdoes not contain an antibiotic resistance determinant, containing afunctional partition locus and bearing a purA gene whose acquisition bya host cell can be selected by purine-independent growth.